I've never actually cried while watching an anime but I've been deeply moved by some. The Melancholy of Haruhi Suzimiya was one of the ones that affected me greatly. I got really into it and I was really sad when I finished it. I hope they hurry up with the next season or show. Clannad was the one that brought me closest to tears. Episode 9 really did a number on me though. I'm not sure if I'd be able to watch it again but I guess I can take a fall for a good anime.
Eureka Seven never made me cry or even get close to it but I watched it with full concentration. I haven't seen the other ones on your list but I'll be sure to check them out.